PoplarV1, Main, Exploration, bibRecord, 002A59

Genome-wide identification and in silico analysis of poplar peptide deformylases.

Identifieur interne : 002A59 ( Main/Exploration ); précédent : 002A58; suivant : 002A60

Genome-wide identification and in silico analysis of poplar peptide deformylases.

Auteurs : Chang-Cai Liu [Oman] ; Bao-Guang Liu ; Zhi-Wei Yang ; Chun-Ming Li ; Bai-Chen Wang ; Chuan-Ping Yang

Source :

International journal of molecular sciences [ 1422-0067 ] ; 2012.

RBID : pubmed:22606033

Descripteurs français

KwdFr :
- Alignement de séquences (MeSH), Amidohydrolases (génétique), Amidohydrolases (métabolisme), Arabidopsis (enzymologie), Arabidopsis (génétique), Données de séquences moléculaires (MeSH), Génome végétal (MeSH), Modèles moléculaires (MeSH), Phylogenèse (MeSH), Populus (enzymologie), Populus (génétique), Protéines d'Arabidopsis (métabolisme), Séquence d'acides aminés (MeSH), Séquence nucléotidique (MeSH).
MESH :
- enzymologie : Arabidopsis, Populus.
- génétique : Amidohydrolases, Arabidopsis, Populus.
- métabolisme : Amidohydrolases, Protéines d'Arabidopsis.
- Alignement de séquences, Données de séquences moléculaires, Génome végétal, Modèles moléculaires, Phylogenèse, Séquence d'acides aminés, Séquence nucléotidique.

English descriptors

KwdEn :
- Amidohydrolases (genetics), Amidohydrolases (metabolism), Amino Acid Sequence (MeSH), Arabidopsis (enzymology), Arabidopsis (genetics), Arabidopsis Proteins (metabolism), Base Sequence (MeSH), Genome, Plant (MeSH), Models, Molecular (MeSH), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Populus (enzymology), Populus (genetics), Sequence Alignment (MeSH).
MESH :
- chemical , genetics : Amidohydrolases.
- chemical , metabolism : Amidohydrolases, Arabidopsis Proteins.
- enzymology : Arabidopsis, Populus.
- genetics : Arabidopsis, Populus.
- Amino Acid Sequence, Base Sequence, Genome, Plant, Models, Molecular, Molecular Sequence Data, Phylogeny, Sequence Alignment.

Abstract

Peptide deformylases (PDF) behave as monomeric metal cation hydrolases for the removal of the N-formyl group (Fo). This is an essential step in the N-terminal Met excision (NME) that occurs in these proteins from eukaryotic mitochondria or chloroplasts. Although PDFs have been identified and their structure and function have been characterized in several herbaceous species, it remains as yet unexplored in poplar. Here, we report on the first identification of two genes (PtrPDF1A and PtrPDF1B) respectively encoding two putative PDF polypeptides in Populus trichocarpa by genome-wide investigation. One of them (XP_002300047.1) encoded by PtrPDF1B (XM_002300011.1) was truncated, and then revised into a complete sequence based on its ESTs support with high confidence. We document that the two PDF1s of Populus are evolutionarily divergent, likely as a result of independent duplicated events. Furthermore, in silico simulations demonstrated that PtrPDF1A and PtrPDF1B should act as similar PDF catalytic activities to their corresponding PDF orthologs in Arabidopsis. This result would be value of for further assessment of their biological activities in poplar, and further experiments are now required to confirm them.

DOI: 10.3390/ijms13045112
PubMed: 22606033
PubMed Central: PMC3344269

Affiliations:

Oman

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 002A42
to stream Main, to step Curation: 002A42

Le document en format XML

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<front><div type="abstract" xml:lang="en">Peptide deformylases (PDF) behave as monomeric metal cation hydrolases for the removal of the N-formyl group (Fo). This is an essential step in the N-terminal Met excision (NME) that occurs in these proteins from eukaryotic mitochondria or chloroplasts. Although PDFs have been identified and their structure and function have been characterized in several herbaceous species, it remains as yet unexplored in poplar. Here, we report on the first identification of two genes (PtrPDF1A and PtrPDF1B) respectively encoding two putative PDF polypeptides in Populus trichocarpa by genome-wide investigation. One of them (XP_002300047.1) encoded by PtrPDF1B (XM_002300011.1) was truncated, and then revised into a complete sequence based on its ESTs support with high confidence. We document that the two PDF1s of Populus are evolutionarily divergent, likely as a result of independent duplicated events. Furthermore, in silico simulations demonstrated that PtrPDF1A and PtrPDF1B should act as similar PDF catalytic activities to their corresponding PDF orthologs in Arabidopsis. This result would be value of for further assessment of their biological activities in poplar, and further experiments are now required to confirm them.</div>
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<Abstract><AbstractText>Peptide deformylases (PDF) behave as monomeric metal cation hydrolases for the removal of the N-formyl group (Fo). This is an essential step in the N-terminal Met excision (NME) that occurs in these proteins from eukaryotic mitochondria or chloroplasts. Although PDFs have been identified and their structure and function have been characterized in several herbaceous species, it remains as yet unexplored in poplar. Here, we report on the first identification of two genes (PtrPDF1A and PtrPDF1B) respectively encoding two putative PDF polypeptides in Populus trichocarpa by genome-wide investigation. One of them (XP_002300047.1) encoded by PtrPDF1B (XM_002300011.1) was truncated, and then revised into a complete sequence based on its ESTs support with high confidence. We document that the two PDF1s of Populus are evolutionarily divergent, likely as a result of independent duplicated events. Furthermore, in silico simulations demonstrated that PtrPDF1A and PtrPDF1B should act as similar PDF catalytic activities to their corresponding PDF orthologs in Arabidopsis. This result would be value of for further assessment of their biological activities in poplar, and further experiments are now required to confirm them.</AbstractText>
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<ReferenceList><Reference><Citation>Nucleic Acids Res. 2007 Jan;35(Database issue):D61-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17130148</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2005 Feb;137(2):623-37</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15681659</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Biochem J. 2008 Aug 1;413(3):417-27</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18412546</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proteomics. 2008 Jul;8(14):2809-31</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18655050</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell Physiol. 2008 Oct;49(10):1536-46</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18718933</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Protoc. 2009;4(1):1-13</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19131951</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Mol Biol. 2009 Apr 17;387(5):1211-28</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19236878</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Phys Chem Chem Phys. 2009 Nov 21;11(43):10035-41</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19865756</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Biol Chem. 2005 Dec 23;280(51):42315-24</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16192279</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2006 Jan 15;22(2):195-201</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16301204</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2006 Sep 15;313(5793):1596-604</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16973872</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19920124</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Inform. 2009 Oct;23(1):205-11</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20180275</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Theor Biol. 2010 Dec 7;267(3):363-74</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20831875</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2011 Oct;28(10):2731-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21546353</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2012 Jan;40(Database issue):D290-301</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22127870</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>EMBO J. 2000 Nov 1;19(21):5916-29</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11060042</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2001 Sep;127(1):97-107</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11553738</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2002 Jan 1;30(1):276-80</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11752314</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>EMBO J. 2003 Jan 2;22(1):13-23</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12505980</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Mol Biol. 2003 Jan 24;325(4):595-622</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12507466</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell. 2003 Aug;15(8):1817-32</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12897255</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Cell Mol Life Sci. 2004 Jun;61(12):1455-74</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15197470</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 1987 Jul;4(4):406-25</Citation>
<ArticleIdList><ArticleId IdType="pubmed">3447015</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15608248</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Yi Chuan. 2007 Aug;29(8):1023-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17681935</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
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<name sortKey="Liu, Bao Guang" sort="Liu, Bao Guang" uniqKey="Liu B" first="Bao-Guang" last="Liu">Bao-Guang Liu</name>
<name sortKey="Wang, Bai Chen" sort="Wang, Bai Chen" uniqKey="Wang B" first="Bai-Chen" last="Wang">Bai-Chen Wang</name>
<name sortKey="Yang, Chuan Ping" sort="Yang, Chuan Ping" uniqKey="Yang C" first="Chuan-Ping" last="Yang">Chuan-Ping Yang</name>
<name sortKey="Yang, Zhi Wei" sort="Yang, Zhi Wei" uniqKey="Yang Z" first="Zhi-Wei" last="Yang">Zhi-Wei Yang</name>
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<country name="Oman"><noRegion><name sortKey="Liu, Chang Cai" sort="Liu, Chang Cai" uniqKey="Liu C" first="Chang-Cai" last="Liu">Chang-Cai Liu</name>
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   |clé=     pubmed:22606033
   |texte=   Genome-wide identification and in silico analysis of poplar peptide deformylases.
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Genome-wide identification and in silico analysis of poplar peptide deformylases.

Genome-wide identification and in silico analysis of poplar peptide deformylases.

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